LaTeX Warning: Label `…' multiply defined — Label defined twice
Two \labels share a name, so references may point to the wrong place.
Fix
Give each label a unique name.
main.tex\documentclass{article}
\begin{document}
\section{Method}\label{sec:method}
Text.
\section{Evaluation}\label{sec:method}
See Section~\ref{sec:method}.
\end{document}\documentclass{article}
\begin{document}
\section{Method}\label{sec:method}
Text.
\section{Evaluation}\label{sec:evaluation}
See Section~\ref{sec:method}.
\end{document}main.logLaTeX Warning: Label `sec:method' multiply defined.